The NDManager Handbook
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The NDManager Handbook

Lynn Hazan

Michaël Zugaro

Revision 1.4 (2011-08-04)

Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.1 or any later version published by the Free Software Foundation; with no Invariant Sections, with no Front-Cover Texts, and with no Back-Cover Texts. A copy of the license is included in the section entitled "GNU Free Documentation License".

NDManager (Neurophysiological Data Manager) is a simple graphical application designed to help neurophysiologists manage their experimental recording parameters (e.g., number of channels and sampling rate of the acquisition system) and process their data (data filtering, spike extraction, PCA, etc.)

NDManager was developed by Lynn Hazan in G. Buzsáki's lab (CMBN, Rutgers Newark, USA). The NDManager Plugins were developed by Michaël Zugaro (CNRS-Collège de France, France). If you use Klusters for your analyses, please be kind enough to cite the following article in your publications:

L. Hazan, M. Zugaro, G. Buzsáki (2006). Klusters, NeuroScope, NDManager: a Free Software Suite for Neurophysiological Data Processing and Visualization, J. Neurosci. Methods 155:207-216.


Table of Contents

1. Introduction
2. Getting Started
Example 1 (Spike2)
Preparing the Data Files
Creating a Template Parameter File
Processing the Data
Example 2 (dual-Spike2)
Preparing the Data Files
Creating a Template Parameter File
Processing the Data
Example 3 (Neuralynx)
Preparing the Data Files
Creating a Template Parameter File
Processing the Data
More Information
Acquisition System and Video
Editing a Parameter File with NeuroScope
3. Creation and Modification of Parameter Files
Starting a session
Creating a Parameter File
Modifying a Parameter File
General Page
Acquisition System Page
Video Page
Local Field Potential Page
Files Page
Anatomical Groups Page
Spike Groups Page
Units Page
NeuroScope Page
Miscellaneous
Video
Clusters
Channel Colors
Channel Offsets
Scripts Page
4. Data Processing
5. Queries
6. File Formats
Parameter Files
Script Description Files
7. Menu Entries
The File Menu
The Actions Menu
The Settings Menu
The Help Menu
8. Credits and License
A. Installation
How to obtain NDManager
Requirements
Compilation and Installation
Next
 


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